Transcript: Mouse NM_001085491.2

Mus musculus family with sequence similarity 229, member A (Fam229a), mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Fam229a (68233)
Length:
572
CDS:
10..396

Additional Resources:

NCBI RefSeq record:
NM_001085491.2
NBCI Gene record:
Fam229a (68233)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001085491.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000268999 AGCCTGTAGCTACGGATCAAA pLKO_005 263 CDS 100% 5.625 3.938 N Fam229a n/a
2 TRCN0000269046 TGGACATGAGTGCCCAGGAGA pLKO_005 161 CDS 100% 0.880 0.616 N Fam229a n/a
3 TRCN0000269045 ACGCTGCTGCACGTGCCCATC pLKO_005 328 CDS 100% 0.000 0.000 N Fam229a n/a
4 TRCN0000268998 CCCATTGAGGCCGGAGACTCC pLKO_005 202 CDS 100% 0.000 0.000 N Fam229a n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001085491.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.