Transcript: Human NM_001100619.2

Homo sapiens Cdk5 and Abl enzyme substrate 1 (CABLES1), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-23
Taxon:
Homo sapiens (human)
Gene:
CABLES1 (91768)
Length:
5024
CDS:
1..1902

Additional Resources:

NCBI RefSeq record:
NM_001100619.2
NBCI Gene record:
CABLES1 (91768)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001100619.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000005412 GCCTTTGAATTCCCGGTGTTA pLKO.1 1804 CDS 100% 0.000 0.000 N CABLES1 n/a
2 TRCN0000005408 GCACTTACTTACTACTGGAAA pLKO.1 1954 3UTR 100% 4.950 3.960 N CABLES1 n/a
3 TRCN0000433848 ACACGAAGTCAAGCATTTAAT pLKO_005 1737 CDS 100% 15.000 10.500 N CABLES1 n/a
4 TRCN0000432589 AGGAGAAGTTTCCTCACATTA pLKO_005 1508 CDS 100% 13.200 9.240 N CABLES1 n/a
5 TRCN0000417758 CAAAGAGTGTGCCAATCTATT pLKO_005 2341 3UTR 100% 13.200 9.240 N CABLES1 n/a
6 TRCN0000420407 GAAGATCCTTCTGTAGTATAT pLKO_005 1031 CDS 100% 13.200 9.240 N CABLES1 n/a
7 TRCN0000436363 GAATGGCAGAATAGTCCTTAT pLKO_005 1002 CDS 100% 10.800 7.560 N CABLES1 n/a
8 TRCN0000005411 CCAATTTCTGTTACCCACAAA pLKO.1 1200 CDS 100% 4.950 3.465 N CABLES1 n/a
9 TRCN0000005409 CCTGGAAGATATTGAGGAGAA pLKO.1 882 CDS 100% 4.050 2.835 N CABLES1 n/a
10 TRCN0000005410 CCTGGGAGACTTTATGGACTA pLKO.1 1350 CDS 100% 4.050 2.835 N CABLES1 n/a
11 TRCN0000215592 GAGAAGTTTCCTCACATTAAA pLKO.1 1510 CDS 100% 15.000 12.000 N Cables1 n/a
12 TRCN0000248780 GAGAAGTTTCCTCACATTAAA pLKO_005 1510 CDS 100% 15.000 12.000 N Cables1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001100619.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.