Transcript: Mouse NM_001101631.1

Mus musculus predicted gene 3285 (Gm3285), mRNA.

Source:
NCBI, updated 2018-05-26
Taxon:
Mus musculus (mouse)
Gene:
Gm3285 (100041351)
Length:
664
CDS:
45..650

Additional Resources:

NCBI RefSeq record:
NM_001101631.1
NBCI Gene record:
Gm3285 (100041351)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001101631.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000262749 CAGCCCTGCTGTGTACCTGTT pLKO_005 315 CDS 100% 1.350 0.945 N Gm3285 n/a
2 TRCN0000282420 CTGTCTGTTGCAAGCCTGTCT pLKO_005 361 CDS 100% 2.640 1.584 N Gm3285 n/a
3 TRCN0000282418 TCTGCTGCACACCTGTCTGTT pLKO_005 349 CDS 100% 4.950 2.475 Y Gm3285 n/a
4 TRCN0000262748 TGTTTGTTGCACACCTGTCTG pLKO_005 332 CDS 100% 4.050 2.025 Y Gm3285 n/a
5 TRCN0000262750 CCTCATGCTGCCAGCAGTCTA pLKO_005 256 CDS 100% 1.650 0.825 Y Gm3285 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001101631.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.