Transcript: Human NM_001105538.1

Homo sapiens MYB binding protein 1a (MYBBP1A), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-03
Taxon:
Homo sapiens (human)
Gene:
MYBBP1A (10514)
Length:
4122
CDS:
63..4061

Additional Resources:

NCBI RefSeq record:
NM_001105538.1
NBCI Gene record:
MYBBP1A (10514)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001105538.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000415855 CTCAAAGCCGACTTGAATATA pLKO_005 663 CDS 100% 15.000 10.500 N MYBBP1A n/a
2 TRCN0000422145 CTCTCTTTGCAAACCTGTTTG pLKO_005 457 CDS 100% 10.800 7.560 N MYBBP1A n/a
3 TRCN0000428909 GTGGGATCCGTGAACCTATTC pLKO_005 759 CDS 100% 10.800 7.560 N MYBBP1A n/a
4 TRCN0000020927 AGCACCAACAACCAGAAGAAA pLKO.1 1338 CDS 100% 5.625 3.938 N MYBBP1A n/a
5 TRCN0000020928 GAGACGAAGAAGCGCAAGAAA pLKO.1 3591 CDS 100% 5.625 3.938 N MYBBP1A n/a
6 TRCN0000020925 CCACTCGTTCTTTGTCACAAA pLKO.1 1505 CDS 100% 4.950 3.465 N MYBBP1A n/a
7 TRCN0000020926 CGAGATGAAATATGCCCTGAA pLKO.1 266 CDS 100% 4.050 2.835 N MYBBP1A n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001105538.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.