Transcript: Human NM_001105574.2

Homo sapiens H6 family homeobox 3 (HMX3), mRNA.

Source:
NCBI, updated 2019-06-30
Taxon:
Homo sapiens (human)
Gene:
HMX3 (340784)
Length:
2847
CDS:
82..1155

Additional Resources:

NCBI RefSeq record:
NM_001105574.2
NBCI Gene record:
HMX3 (340784)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001105574.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000434352 AGAGCCCGGACGAGATCATTC pLKO_005 590 CDS 100% 3.600 2.520 N Hmx3 n/a
2 TRCN0000015912 GACCTGGCTTTCCCTCGCTTT pLKO.1 349 CDS 100% 1.350 0.945 N HMX3 n/a
3 TRCN0000015910 GCCCATCCTCTACCACGAGAA pLKO.1 999 CDS 100% 1.350 0.945 N HMX3 n/a
4 TRCN0000454252 AGAACCTGCTCAACGGAGACC pLKO_005 182 CDS 100% 0.720 0.504 N HMX3 n/a
5 TRCN0000418997 CACAAGGAGCTGGACTCCAAG pLKO_005 571 CDS 100% 1.350 0.675 Y Hmx3 n/a
6 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 1829 3UTR 100% 5.625 2.813 Y KLHL30 n/a
7 TRCN0000240652 TCTGGTTCCAGAACCGCCGAA pLKO_005 899 CDS 100% 0.720 0.360 Y Nkx1-1 n/a
8 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 1829 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001105574.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.