Transcript: Mouse NM_001109985.1

Mus musculus nitric oxide synthase 1 (neuronal) adaptor protein (Nos1ap), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Nos1ap (70729)
Length:
2973
CDS:
486..1997

Additional Resources:

NCBI RefSeq record:
NM_001109985.1
NBCI Gene record:
Nos1ap (70729)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001109985.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000251402 AGAATCCGGTATGAGTTTAAA pLKO_005 654 CDS 100% 15.000 21.000 N Nos1ap n/a
2 TRCN0000265192 TGGACGGTGTCAAGGTGATTC pLKO_005 718 CDS 100% 10.800 15.120 N Nos1ap n/a
3 TRCN0000251401 CCTGCAACCCAGCTCATATAA pLKO_005 2790 3UTR 100% 15.000 10.500 N Nos1ap n/a
4 TRCN0000251403 TCTTCAGATGTAACGTCTTTA pLKO_005 889 CDS 100% 13.200 9.240 N Nos1ap n/a
5 TRCN0000251400 CACGCCTGCTCAATGTCTTAC pLKO_005 1930 CDS 100% 10.800 7.560 N Nos1ap n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001109985.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.