Transcript: Mouse NM_001110496.1

Mus musculus transmembrane protein 87A (Tmem87a), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Tmem87a (211499)
Length:
2924
CDS:
57..1736

Additional Resources:

NCBI RefSeq record:
NM_001110496.1
NBCI Gene record:
Tmem87a (211499)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001110496.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000246454 GCTCTCTTTGTACCGACATTT pLKO_005 1259 CDS 100% 13.200 18.480 N Tmem87a n/a
2 TRCN0000246452 GTGGATATTCATTAGCTTAAC pLKO_005 1196 CDS 100% 10.800 14.040 N Tmem87a n/a
3 TRCN0000246450 GTGTATTGTGTACGTACTATT pLKO_005 767 CDS 100% 13.200 10.560 N Tmem87a n/a
4 TRCN0000246451 TTGGCAGTGGCAGCGTCTATT pLKO_005 1296 CDS 100% 13.200 10.560 N Tmem87a n/a
5 TRCN0000246453 GTGTCATTTACACCATAATTT pLKO_005 2069 3UTR 100% 15.000 10.500 N Tmem87a n/a
6 TRCN0000144956 GAACGAATGATCACACACTTT pLKO.1 1695 CDS 100% 4.950 3.465 N TMEM87A n/a
7 TRCN0000139144 CCAGACTGATCTTGCTTCCTT pLKO.1 1133 CDS 100% 3.000 2.100 N TMEM87A n/a
8 TRCN0000144308 CAATGCATGAACCATTGCAAA pLKO.1 574 CDS 100% 0.495 0.693 N TMEM87A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001110496.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.