Transcript: Human NM_001124767.2

Homo sapiens small integral membrane protein 4 (SMIM4), mRNA.

Source:
NCBI, updated 2019-05-01
Taxon:
Homo sapiens (human)
Gene:
SMIM4 (440957)
Length:
1769
CDS:
152..364

Additional Resources:

NCBI RefSeq record:
NM_001124767.2
NBCI Gene record:
SMIM4 (440957)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001124767.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000272374 ATGGAGTGGATCATGATTAAA pLKO_005 257 CDS 100% 15.000 10.500 N SMIM4 n/a
2 TRCN0000284739 GAAGCAGCGATTTGGCATCTA pLKO_005 199 CDS 100% 4.950 3.465 N SMIM4 n/a
3 TRCN0000284741 GGAGACCTTCTATGATGTCTA pLKO_005 292 CDS 100% 4.950 3.465 N SMIM4 n/a
4 TRCN0000272319 TTTGTCCTGGGAGGAACGATG pLKO_005 239 CDS 100% 4.050 2.835 N SMIM4 n/a
5 TRCN0000272320 TACCGGTTCCTGCCCTTCTTT pLKO_005 218 CDS 100% 0.000 0.000 N SMIM4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001124767.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.