Transcript: Human NM_001142308.3

Homo sapiens MAM and LDL receptor class A domain containing 1 (MALRD1), mRNA.

Source:
NCBI, updated 2019-09-27
Taxon:
Homo sapiens (human)
Gene:
MALRD1 (340895)
Length:
6850
CDS:
139..6609

Additional Resources:

NCBI RefSeq record:
NM_001142308.3
NBCI Gene record:
MALRD1 (340895)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001142308.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000272471 CTGCTCCGAATGTCCATTAAA pLKO_005 6201 CDS 100% 15.000 21.000 N MALRD1 n/a
2 TRCN0000272416 ATCGATGCCATATCAAGTTTA pLKO_005 6299 CDS 100% 13.200 18.480 N MALRD1 n/a
3 TRCN0000272415 TCCAGTAACAGTCCGTTTAAG pLKO_005 5710 CDS 100% 13.200 18.480 N MALRD1 n/a
4 TRCN0000272470 TGCTCTACAGACGAGTGTATA pLKO_005 5998 CDS 100% 13.200 18.480 N MALRD1 n/a
5 TRCN0000284751 GAAGTCTCCACAATCTGATAG pLKO_005 6658 3UTR 100% 10.800 7.560 N MALRD1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001142308.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.