Transcript: Mouse NM_001159503.2

Mus musculus tumor necrosis factor (ligand) superfamily, membrane-bound member 13 (Tnfsfm13), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-04-16
Taxon:
Mus musculus (mouse)
Gene:
Tnfsfm13 (619441)
Length:
2229
CDS:
345..1571

Additional Resources:

NCBI RefSeq record:
NM_001159503.2
NBCI Gene record:
Tnfsfm13 (619441)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001159503.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000271940 GCTTTGACTCCATGGATATTA pLKO_005 1707 3UTR 100% 15.000 7.500 Y Tnfsfm13 n/a
2 TRCN0000281903 ATCCTGACCGTGCCTACAATA pLKO_005 1426 CDS 100% 13.200 6.600 Y Tnfsfm13 n/a
3 TRCN0000066323 CGAGCTATTGCAGCCCATTAT pLKO.1 657 CDS 100% 13.200 6.600 Y Tnfsf12 n/a
4 TRCN0000076986 CTGGAATTTATCTGCTCTATA pLKO.1 1297 CDS 100% 13.200 6.600 Y Tnfsf13 n/a
5 TRCN0000200536 CTGGAATTTATCTGCTCTATA pLKO.1 1297 CDS 100% 13.200 6.600 Y Tnfsfm13 n/a
6 TRCN0000281904 GAGCTATTGCAGCCCATTATG pLKO_005 658 CDS 100% 13.200 6.600 Y Tnfsfm13 n/a
7 TRCN0000066325 CCTCGAAGAAGTGCTCCTAAA pLKO.1 615 CDS 100% 10.800 5.400 Y Tnfsf12 n/a
8 TRCN0000281850 GAAACTCTATTCCGATGTATC pLKO_005 1389 CDS 100% 10.800 5.400 Y Tnfsfm13 n/a
9 TRCN0000281849 GATGTGGCAACCAGTACTTAG pLKO_005 1226 CDS 100% 10.800 5.400 Y Tnfsfm13 n/a
10 TRCN0000191615 GCTTTCAGTATTTCACCTATT pLKO.1 1947 3UTR 100% 10.800 5.400 Y Tnfsfm13 n/a
11 TRCN0000076985 GCAGGTGTCTTTCATTTACAT pLKO.1 1458 CDS 100% 5.625 2.813 Y Tnfsf13 n/a
12 TRCN0000192609 GCAGGTGTCTTTCATTTACAT pLKO.1 1458 CDS 100% 5.625 2.813 Y Tnfsfm13 n/a
13 TRCN0000192936 GCGTCCAAATTCTTGTTACTA pLKO.1 1968 3UTR 100% 5.625 2.813 Y Tnfsfm13 n/a
14 TRCN0000373711 CTGTACTGTCAGGTGCACTTT pLKO_005 831 CDS 100% 4.950 2.475 Y TNFSF12 n/a
15 TRCN0000076983 TGGCTAGACAAAGGACAAGGA pLKO.1 1610 3UTR 100% 2.640 1.320 Y Tnfsf13 n/a
16 TRCN0000066327 GAATTTACAGTCATCAGGGCT pLKO.1 798 CDS 100% 0.660 0.330 Y Tnfsf12 n/a
17 TRCN0000066326 GTACCTTTCTTGGAACAACTA pLKO.1 588 CDS 100% 0.000 0.000 Y Tnfsf12 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001159503.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.