Transcript: Human NM_001161346.2

Homo sapiens checkpoint with forkhead and ring finger domains (CHFR), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-09-15
Taxon:
Homo sapiens (human)
Gene:
CHFR (55743)
Length:
11228
CDS:
72..2030

Additional Resources:

NCBI RefSeq record:
NM_001161346.2
NBCI Gene record:
CHFR (55743)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001161346.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000415991 GTCGCACAACCGCGTAGAAAT pLKO_005 855 CDS 100% 13.200 18.480 N CHFR n/a
2 TRCN0000424535 GTGAGCTGACCTATCAGTATC pLKO_005 1864 CDS 100% 10.800 15.120 N CHFR n/a
3 TRCN0000124629 GCCATGTCATCTGGAATAATA pLKO.1 2995 3UTR 100% 15.000 10.500 N Chfr n/a
4 TRCN0000007702 CCTGTTATCCTTGTTTGTAAA pLKO.1 3068 3UTR 100% 13.200 9.240 N CHFR n/a
5 TRCN0000007703 CGCCATGAAATTCAATCATAT pLKO.1 1982 CDS 100% 13.200 9.240 N CHFR n/a
6 TRCN0000007705 GCATACCTCTATGAATCTTTA pLKO.1 420 CDS 100% 13.200 9.240 N CHFR n/a
7 TRCN0000433149 TTTCCGAAACTACAGTTAAAG pLKO_005 2346 3UTR 100% 13.200 9.240 N CHFR n/a
8 TRCN0000427447 AGAAGCAGACATGCCCTTTAC pLKO_005 343 CDS 100% 10.800 7.560 N CHFR n/a
9 TRCN0000419217 GACGACAGCAGTCCAGGATTA pLKO_005 1436 CDS 100% 10.800 7.560 N CHFR n/a
10 TRCN0000434044 AGTTGCCAGTGGCCGTAACAT pLKO_005 1906 CDS 100% 5.625 3.938 N CHFR n/a
11 TRCN0000432289 AGACGCTGACATGCATCATCT pLKO_005 934 CDS 100% 4.950 3.465 N CHFR n/a
12 TRCN0000007704 GCAGTGAAGAAGATGTGCAAA pLKO.1 1147 CDS 100% 4.950 3.465 N CHFR n/a
13 TRCN0000007706 GCAGCCTTTCTGCCACCTGTA pLKO.1 1577 CDS 100% 1.350 0.810 N CHFR n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001161346.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.