Transcript: Human NM_001161546.2

Homo sapiens proline rich basic protein 1 (PROB1), mRNA.

Source:
NCBI, updated 2019-06-30
Taxon:
Homo sapiens (human)
Gene:
PROB1 (389333)
Length:
4513
CDS:
24..3071

Additional Resources:

NCBI RefSeq record:
NM_001161546.2
NBCI Gene record:
PROB1 (389333)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001161546.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000203703 CAGATCGTCCTATTGGAACTT pLKO.1 1543 CDS 100% 4.950 6.930 N PROB1 n/a
2 TRCN0000187605 GAAGCTCAGAATGGGTTAACT pLKO.1 1629 CDS 100% 5.625 3.938 N PROB1 n/a
3 TRCN0000185726 GAAATTTCAGATCTTGCCTTT pLKO.1 1728 CDS 100% 4.050 2.835 N PROB1 n/a
4 TRCN0000188483 CAACAGAGATGCAGAGTCCAT pLKO.1 1699 CDS 100% 2.640 1.848 N PROB1 n/a
5 TRCN0000204640 GAATGGGTTAACTCAGGAGGA pLKO.1 1637 CDS 100% 2.160 1.512 N PROB1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001161546.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.