Transcript: Mouse NM_001163721.1

Mus musculus small integral membrane protein 1 (Smim1), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Smim1 (68859)
Length:
3454
CDS:
349..585

Additional Resources:

NCBI RefSeq record:
NM_001163721.1
NBCI Gene record:
Smim1 (68859)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001163721.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000346869 TAACGACTGTGGCTCCTATTT pLKO_005 1039 3UTR 100% 13.200 18.480 N Smim1 n/a
2 TRCN0000346870 TACGTGCACAAGTGCAAATAA pLKO_005 565 CDS 100% 15.000 10.500 N Smim1 n/a
3 TRCN0000346872 GGAAGAAGCCTCATGCTATAG pLKO_005 435 CDS 100% 10.800 7.560 N Smim1 n/a
4 TRCN0000346868 GGCCCTCTTCTGGATCATCTT pLKO_005 519 CDS 100% 4.950 3.465 N Smim1 n/a
5 TRCN0000365607 GGCCCTCTTCTGGATCATCTT pLKO_005 519 CDS 100% 4.950 3.465 N SMIM1 n/a
6 TRCN0000346873 TGAAGTCAGCATGACCGCCAT pLKO_005 405 CDS 100% 2.160 1.512 N Smim1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001163721.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.