Transcript: Mouse NM_001163848.1

Mus musculus TBC1 domain family, member 24 (Tbc1d24), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Tbc1d24 (224617)
Length:
7266
CDS:
319..2004

Additional Resources:

NCBI RefSeq record:
NM_001163848.1
NBCI Gene record:
Tbc1d24 (224617)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001163848.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000182252 CCTCAATTACTTTGCCCGTGT pLKO.1 981 CDS 100% 2.160 3.024 N Tbc1d24 n/a
2 TRCN0000337912 CTGGAGCGAGAGGACTAAATT pLKO_005 1551 CDS 100% 15.000 12.000 N Tbc1d24 n/a
3 TRCN0000337980 GAGTCTTCCTGTATGACATTT pLKO_005 847 CDS 100% 13.200 9.240 N Tbc1d24 n/a
4 TRCN0000337910 GCCTTTGCCATCCGCCTATTT pLKO_005 1183 CDS 100% 13.200 9.240 N Tbc1d24 n/a
5 TRCN0000178120 GCAGAAGGGTATAACTGTCAA pLKO.1 1254 CDS 100% 4.950 3.465 N Tbc1d24 n/a
6 TRCN0000200449 GCTCACCTCTACAGAAGGTTA pLKO.1 3084 3UTR 100% 4.950 3.465 N Tbc1d24 n/a
7 TRCN0000177784 CCGAATGTTTGTCAAGGACAT pLKO.1 1125 CDS 100% 4.050 2.835 N Tbc1d24 n/a
8 TRCN0000176705 CGAATGTTTGTCAAGGACATT pLKO.1 1126 CDS 100% 0.495 0.347 N Tbc1d24 n/a
9 TRCN0000337978 CGAATGTTTGTCAAGGACATT pLKO_005 1126 CDS 100% 0.495 0.347 N Tbc1d24 n/a
10 TRCN0000106535 GCCTGGTCTACAAAGTGAGTT pLKO.1 6560 3UTR 100% 4.950 2.475 Y Gad2 n/a
11 TRCN0000182716 CCTGAGTTCAATTCCCAGCAA pLKO.1 6947 3UTR 100% 2.640 1.320 Y BC028528 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001163848.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.