Transcript: Mouse NM_001164233.1

Mus musculus solute carrier organic anion transporter family, member 6d1 (Slco6d1), transcript variant 2, mRNA.

Source:
NCBI, updated 2015-02-15
Taxon:
Mus musculus (mouse)
Gene:
Slco6d1 (70866)
Length:
2195
CDS:
83..2035

Additional Resources:

NCBI RefSeq record:
NM_001164233.1
NBCI Gene record:
Slco6d1 (70866)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001164233.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000345964 ATACTTGCCACAAGCTTTATT pLKO_005 761 CDS 100% 15.000 10.500 N Slco6d1 n/a
2 TRCN0000345966 TCGTGGCTCATAGTATGATAT pLKO_005 363 CDS 100% 13.200 9.240 N Slco6d1 n/a
3 TRCN0000345968 TGCTGATAATGAAGGTCAATA pLKO_005 1684 CDS 100% 13.200 9.240 N Slco6d1 n/a
4 TRCN0000345967 TACCTGGTGCACGCCAGATAA pLKO_005 1032 CDS 100% 0.000 0.000 N Slco6d1 n/a
5 TRCN0000346047 CTCTGTTCCTGCACCAATATT pLKO_005 1897 CDS 100% 15.000 9.000 N Slco6d1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001164233.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.