Transcript: Human NM_001166387.4

Homo sapiens MAGE family member A12 (MAGEA12), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-25
Taxon:
Homo sapiens (human)
Gene:
MAGEA12 (4111)
Length:
1792
CDS:
285..1229

Additional Resources:

NCBI RefSeq record:
NM_001166387.4
NBCI Gene record:
MAGEA12 (4111)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001166387.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000435610 AGACGAGCTTCCAAGTAGCAC pLKO_005 589 CDS 100% 2.640 3.696 N MAGEA12 n/a
2 TRCN0000434071 GAGTGTGTTGGAGGCATCTGA pLKO_005 959 CDS 100% 3.000 2.100 N MAGEA12 n/a
3 TRCN0000143054 CAACTATACTCTCTGGAGTCA pLKO.1 509 CDS 100% 2.640 1.848 N MAGEA12 n/a
4 TRCN0000143830 CCATCAACTATACTCTCTGGA pLKO.1 505 CDS 100% 2.640 1.848 N MAGEA12 n/a
5 TRCN0000415656 GACAAATAACAGCAGTGGAAA pLKO_005 1584 3UTR 100% 4.950 2.970 N MAGEA12 n/a
6 TRCN0000435819 GATAATCGTCCTGGCCATAAT pLKO_005 890 CDS 100% 13.200 6.600 Y MAGEA2 n/a
7 TRCN0000153016 GCCCATTCTTCACTCTTTGAA pLKO.1 1331 3UTR 100% 5.625 2.813 Y MAGEA6 n/a
8 TRCN0000166663 CCCAAGATTTGGTGCAGGAAA pLKO.1 1024 CDS 100% 4.950 2.475 Y MAGEA1 n/a
9 TRCN0000143087 CGTTGAAACCAGCTATGTGAA pLKO.1 1118 CDS 100% 4.950 2.475 Y MAGEA12 n/a
10 TRCN0000128375 GAATGACAGTAGTCACACATA pLKO.1 1486 3UTR 100% 4.950 2.475 Y MAGEA3 n/a
11 TRCN0000144761 GATTGGGAAATCCATTCCATT pLKO.1 1552 3UTR 100% 4.950 2.475 Y MAGEA2B n/a
12 TRCN0000152384 GATTGGGAAATCCATTCCATT pLKO.1 1552 3UTR 100% 4.950 2.475 Y MAGEA6 n/a
13 TRCN0000127630 CTGATAATCGTCCTGGCCATA pLKO.1 888 CDS 100% 4.050 2.025 Y MAGEA3 n/a
14 TRCN0000142536 GCCACTTGTACATCCTTGTCA pLKO.1 802 CDS 100% 3.000 1.500 Y MAGEA12 n/a
15 TRCN0000142910 CTTTCCTGTGATCTTCAGCAA pLKO.1 722 CDS 100% 2.640 1.320 Y MAGEA12 n/a
16 TRCN0000141457 CAGCTATGTGAAAGTCCTGCA pLKO.1 1127 CDS 100% 2.160 1.080 Y MAGEA12 n/a
17 TRCN0000155661 CCTGTGATCTTCAGCAAAGCT pLKO.1 726 CDS 100% 3.000 1.500 Y MAGEA6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001166387.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.