Transcript: Mouse NM_001194940.2

Mus musculus deleted in liver cancer 1 (Dlc1), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Dlc1 (50768)
Length:
7636
CDS:
448..5079

Additional Resources:

NCBI RefSeq record:
NM_001194940.2
NBCI Gene record:
Dlc1 (50768)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001194940.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000265295 GCTCTCTGCAGGCGCTTAAAT pLKO_005 1981 CDS 100% 15.000 21.000 N Dlc1 n/a
2 TRCN0000251078 GATAACGTACCGGGTTCTATC pLKO_005 3130 CDS 100% 10.800 8.640 N Dlc1 n/a
3 TRCN0000200550 CCTAAGACACTACTACTTGAT pLKO.1 1111 CDS 100% 4.950 3.960 N Dlc1 n/a
4 TRCN0000173288 GCAGGCGCTTAAATACTCTAA pLKO.1 1988 CDS 100% 4.950 3.960 N Dlc1 n/a
5 TRCN0000251076 ATTCGGTAAGTGCACTATTAA pLKO_005 7004 3UTR 100% 15.000 10.500 N Dlc1 n/a
6 TRCN0000264704 GAAAGATGTTGAGGCTATAAA pLKO_005 990 CDS 100% 15.000 10.500 N Dlc1 n/a
7 TRCN0000251077 GTGACGGAGCAGAACTATAAA pLKO_005 2863 CDS 100% 15.000 10.500 N Dlc1 n/a
8 TRCN0000264708 CCTTAAATGTGGACCATAAAG pLKO_005 593 CDS 100% 13.200 9.240 N Dlc1 n/a
9 TRCN0000251075 CTGCACCCGAGGAGATCTTAA pLKO_005 4619 CDS 100% 13.200 9.240 N Dlc1 n/a
10 TRCN0000264706 GATACTGATTCTGATCTAAAC pLKO_005 787 CDS 100% 10.800 7.560 N Dlc1 n/a
11 TRCN0000173484 GTGTTCTACATTCCCGAAGAT pLKO.1 2911 CDS 100% 4.950 3.465 N Dlc1 n/a
12 TRCN0000202495 GCGACCTTAAATGTGGACCAT pLKO.1 589 CDS 100% 2.640 1.848 N Dlc1 n/a
13 TRCN0000217664 GACGACAATGACGAATCATTC pLKO.1 7153 3UTR 100% 1.080 0.756 N Dlc1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001194940.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.