Transcript: Human NM_001199092.1

Homo sapiens tudor domain containing 5 (TDRD5), transcript variant 5, mRNA.

Source:
NCBI, updated 2018-06-25
Taxon:
Homo sapiens (human)
Gene:
TDRD5 (163589)
Length:
2501
CDS:
539..2149

Additional Resources:

NCBI RefSeq record:
NM_001199092.1
NBCI Gene record:
TDRD5 (163589)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001199092.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000158478 CCGTGCTATTACATTGTACAA pLKO.1 1948 CDS 100% 4.950 6.930 N TDRD5 n/a
2 TRCN0000161485 GCTTGGAGAGTATGAGGTAAT pLKO.1 160 5UTR 100% 10.800 8.640 N TDRD5 n/a
3 TRCN0000160581 CCTCAAACGAAGATGTCTATT pLKO.1 1122 CDS 100% 13.200 9.240 N TDRD5 n/a
4 TRCN0000161880 GAAGTGTTCTACCCAGACTTT pLKO.1 872 CDS 100% 4.950 3.465 N TDRD5 n/a
5 TRCN0000165922 GCTGCTGTCAAAGAGACTGTA pLKO.1 398 5UTR 100% 4.950 3.465 N TDRD5 n/a
6 TRCN0000158897 GCTTTATTATGCTAACAGTCT pLKO.1 2286 3UTR 100% 2.640 1.848 N TDRD5 n/a
7 TRCN0000159561 GTCTACTTTGATGTGTAAGTA pLKO.1 2303 3UTR 100% 0.563 0.394 N TDRD5 n/a
8 TRCN0000412368 TATCATCTCTCCTAGTCAATT pLKO_005 640 CDS 100% 13.200 7.920 N TDRD5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001199092.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.