Transcript: Mouse NM_001199310.1

Mus musculus ligase I, DNA, ATP-dependent (Lig1), transcript variant 3, mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Lig1 (16881)
Length:
3194
CDS:
227..3025

Additional Resources:

NCBI RefSeq record:
NM_001199310.1
NBCI Gene record:
Lig1 (16881)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001199310.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000071156 CGGTTCATTCGTGTCCGTAAA pLKO.1 2888 CDS 100% 10.800 15.120 N Lig1 n/a
2 TRCN0000303035 CGGTTCATTCGTGTCCGTAAA pLKO_005 2888 CDS 100% 10.800 15.120 N Lig1 n/a
3 TRCN0000071155 CCTTCCAAGAATAACTATCAT pLKO.1 1070 CDS 100% 5.625 3.938 N Lig1 n/a
4 TRCN0000071157 CGAGAGTGATTCTCCAGTGAA pLKO.1 415 CDS 100% 4.950 3.465 N Lig1 n/a
5 TRCN0000331874 CGAGAGTGATTCTCCAGTGAA pLKO_005 415 CDS 100% 4.950 3.465 N Lig1 n/a
6 TRCN0000071154 CCTTGGATGTTGATGCCACTT pLKO.1 2445 CDS 100% 4.050 2.835 N Lig1 n/a
7 TRCN0000303037 CCTTGGATGTTGATGCCACTT pLKO_005 2445 CDS 100% 4.050 2.835 N Lig1 n/a
8 TRCN0000071153 GCCCGGACATTTGAGAAGATT pLKO.1 1145 CDS 100% 5.625 3.375 N Lig1 n/a
9 TRCN0000303036 GCCCGGACATTTGAGAAGATT pLKO_005 1145 CDS 100% 5.625 3.375 N Lig1 n/a
10 TRCN0000048495 GCTCAAGCTGAAGAAGGACTA pLKO.1 2494 CDS 100% 4.050 2.430 N LIG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001199310.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.