Transcript: Human NM_001242608.2

Homo sapiens neural cell adhesion molecule 1 (NCAM1), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-09-03
Taxon:
Homo sapiens (human)
Gene:
NCAM1 (4684)
Length:
4646
CDS:
194..2374

Additional Resources:

NCBI RefSeq record:
NM_001242608.2
NBCI Gene record:
NCAM1 (4684)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001242608.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000113653 CGTTGGAGAGTCCAAATTCTT pLKO.1 289 CDS 100% 5.625 7.875 N Ncam1 n/a
2 TRCN0000335736 CGTTGGAGAGTCCAAATTCTT pLKO_005 289 CDS 100% 5.625 7.875 N Ncam1 n/a
3 TRCN0000373032 AGAGGATGGAAACTCTATTAA pLKO_005 2029 CDS 100% 15.000 10.500 N NCAM1 n/a
4 TRCN0000373085 CAGCGTTGGAGAGTCCAAATT pLKO_005 286 CDS 100% 13.200 9.240 N NCAM1 n/a
5 TRCN0000073459 CCAAGCTCCAATTACAGCAAT pLKO.1 1529 CDS 100% 4.950 3.465 N NCAM1 n/a
6 TRCN0000073460 CCATGTACCTTGAAGTGCAAT pLKO.1 1383 CDS 100% 4.950 3.465 N NCAM1 n/a
7 TRCN0000073462 CCGATTCATAGTCCTGTCCAA pLKO.1 685 CDS 100% 2.640 1.848 N NCAM1 n/a
8 TRCN0000073461 GCCAAGCTCCAATTACAGCAA pLKO.1 1528 CDS 100% 2.640 1.848 N NCAM1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001242608.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.