Transcript: Mouse NM_001252643.2

Mus musculus histamine receptor H1 (Hrh1), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-10
Taxon:
Mus musculus (mouse)
Gene:
Hrh1 (15465)
Length:
3870
CDS:
332..1798

Additional Resources:

NCBI RefSeq record:
NM_001252643.2
NBCI Gene record:
Hrh1 (15465)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001252643.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000219101 ATCTGTCCAAACGAGATATTT pLKO_005 2992 3UTR 100% 15.000 21.000 N Hrh1 n/a
2 TRCN0000229453 GTGGTGGTTCTAAGTAGTATC pLKO_005 422 CDS 100% 10.800 15.120 N Hrh1 n/a
3 TRCN0000028729 GATTCCCTATTTCATCTTCTT pLKO.1 1618 CDS 100% 4.950 3.960 N Hrh1 n/a
4 TRCN0000229455 TCTCCTTCCTGTGGGTTATAC pLKO_005 792 CDS 100% 13.200 9.240 N Hrh1 n/a
5 TRCN0000229454 TTTGGCTCTCTATGGATTATG pLKO_005 636 CDS 100% 13.200 9.240 N Hrh1 n/a
6 TRCN0000229456 GCCAAGCAGTTGGGTTGTATC pLKO_005 1574 CDS 100% 10.800 7.560 N Hrh1 n/a
7 TRCN0000028677 CCCATGAACATCCTCTATCTT pLKO.1 575 CDS 100% 5.625 3.938 N Hrh1 n/a
8 TRCN0000028668 CTGTGGGTTATACCTATACTT pLKO.1 800 CDS 100% 5.625 3.938 N Hrh1 n/a
9 TRCN0000028707 CCTGTGCACATGTTCACCATT pLKO.1 1676 CDS 100% 4.950 3.465 N Hrh1 n/a
10 TRCN0000028696 GCTGTGGTTCTATGTGAAGAT pLKO.1 949 CDS 100% 4.950 3.465 N Hrh1 n/a
11 TRCN0000166364 CACACACACACACACACACAA pLKO.1 3641 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001252643.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.