Transcript: Human NM_001252676.1

Homo sapiens acyl-CoA synthetase short chain family member 1 (ACSS1), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-08-11
Taxon:
Homo sapiens (human)
Gene:
ACSS1 (84532)
Length:
3519
CDS:
271..1977

Additional Resources:

NCBI RefSeq record:
NM_001252676.1
NBCI Gene record:
ACSS1 (84532)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001252676.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000423168 GGCCTACCCAGGCTATTACTT pLKO_005 1476 CDS 100% 5.625 7.875 N ACSS1 n/a
2 TRCN0000436733 GACACAGCTACGTGGTGTATG pLKO_005 932 CDS 100% 10.800 8.640 N ACSS1 n/a
3 TRCN0000045378 GCCACCAAGATCGCCAAATAT pLKO.1 1756 CDS 100% 15.000 10.500 N ACSS1 n/a
4 TRCN0000434266 ACATGTAGTGTGTGGATTTAC pLKO_005 2436 3UTR 100% 13.200 9.240 N ACSS1 n/a
5 TRCN0000424197 GGTTGAAGATCAATCAGTTCT pLKO_005 1040 CDS 100% 4.950 3.465 N ACSS1 n/a
6 TRCN0000045382 CTACCAGAAGTGCAAGGACAA pLKO.1 1938 CDS 100% 4.050 2.835 N ACSS1 n/a
7 TRCN0000045381 CAAGGTGGTTATCACCTTCAA pLKO.1 546 CDS 100% 0.495 0.347 N ACSS1 n/a
8 TRCN0000045380 CTGTTGCTGAAATACGGTGAT pLKO.1 1084 CDS 100% 4.050 2.430 N ACSS1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001252676.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.