Transcript: Human NM_001256356.1

Homo sapiens ubiquitin conjugating enzyme E2 L3 (UBE2L3), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-09-25
Taxon:
Homo sapiens (human)
Gene:
UBE2L3 (7332)
Length:
2932
CDS:
199..567

Additional Resources:

NCBI RefSeq record:
NM_001256356.1
NBCI Gene record:
UBE2L3 (7332)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001256356.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000007208 CCTTAGAATTTATCGTCAGAT pLKO.1 1820 3UTR 100% 4.950 6.930 N UBE2L3 n/a
2 TRCN0000272875 CACTTTCTGGCACCGAGTTTA pLKO_005 943 3UTR 100% 13.200 9.240 N UBE2L3 n/a
3 TRCN0000007211 CCACCGAAGATCACATTTAAA pLKO.1 295 CDS 100% 15.000 9.000 N UBE2L3 n/a
4 TRCN0000272963 CCACCGAAGATCACATTTAAA pLKO_005 295 CDS 100% 15.000 9.000 N UBE2L3 n/a
5 TRCN0000007212 GAATACTCTAAGGACCGTAAA pLKO.1 484 CDS 100% 10.800 6.480 N UBE2L3 n/a
6 TRCN0000272913 GAATACTCTAAGGACCGTAAA pLKO_005 484 CDS 100% 10.800 6.480 N UBE2L3 n/a
7 TRCN0000272876 AGGTCTGTCTGCCAGTAATTA pLKO_005 353 CDS 100% 15.000 7.500 Y UBE2L3 n/a
8 TRCN0000007209 CCAGCAGAGTACCCATTCAAA pLKO.1 274 CDS 100% 5.625 2.813 Y UBE2L3 n/a
9 TRCN0000272938 CCAGCAGAGTACCCATTCAAA pLKO_005 274 CDS 100% 5.625 2.813 Y UBE2L3 n/a
10 TRCN0000040825 GCTGAAGAGTTTACAAAGAAA pLKO.1 520 CDS 100% 5.625 2.813 Y Ube2l3 n/a
11 TRCN0000317881 GCTGAAGAGTTTACAAAGAAA pLKO_005 520 CDS 100% 5.625 2.813 Y Ube2l3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001256356.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.