Transcript: Mouse NM_001271879.1

Mus musculus anoctamin 5 (Ano5), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-06-03
Taxon:
Mus musculus (mouse)
Gene:
Ano5 (233246)
Length:
7633
CDS:
207..2771

Additional Resources:

NCBI RefSeq record:
NM_001271879.1
NBCI Gene record:
Ano5 (233246)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001271879.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000250579 ATCGTTTCTGTTGCAACTAAT pLKO_005 2244 CDS 100% 13.200 18.480 N Ano5 n/a
2 TRCN0000250576 CCTTGAGTGGATACGTCAATA pLKO_005 2344 CDS 100% 13.200 18.480 N Ano5 n/a
3 TRCN0000250577 TATCCTACTCCTGAGTATTTC pLKO_005 681 CDS 100% 13.200 18.480 N Ano5 n/a
4 TRCN0000250578 TAAGCTTGGTAAGGCTATAAA pLKO_005 7452 3UTR 100% 15.000 12.000 N Ano5 n/a
5 TRCN0000250580 GGGAATCAAGATGCCTATTAA pLKO_005 581 CDS 100% 15.000 10.500 N Ano5 n/a
6 TRCN0000193666 CATGAACAACATCATGGGAAT pLKO.1 2123 CDS 100% 0.405 0.284 N Ano5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001271879.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.