Transcript: Human NM_001278306.1

Homo sapiens ubiquitin conjugating enzyme E2 F (putative) (UBE2F), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-08-06
Taxon:
Homo sapiens (human)
Gene:
UBE2F (140739)
Length:
2072
CDS:
143..628

Additional Resources:

NCBI RefSeq record:
NM_001278306.1
NBCI Gene record:
UBE2F (140739)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001278306.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000034109 GCAATAAGATACCCGCTACAA pLKO.1 1036 3UTR 100% 4.950 6.930 N UBE2F n/a
2 TRCN0000435832 GATGACTACATCAAACGTTAT pLKO_005 599 CDS 100% 10.800 8.640 N UBE2F n/a
3 TRCN0000429893 TTCTGCACAAGCGATGCTAAT pLKO_005 988 3UTR 100% 10.800 7.560 N UBE2F n/a
4 TRCN0000034111 CAAAGTGAAATGCCTGACCAA pLKO.1 358 CDS 100% 2.640 1.848 N UBE2F n/a
5 TRCN0000034113 CCAAAGTGAAATGCCTGACCA pLKO.1 357 CDS 100% 2.640 1.848 N UBE2F n/a
6 TRCN0000098573 GCAGAACTTGAAGCTAATTTA pLKO.1 194 CDS 100% 15.000 7.500 Y Ube2f n/a
7 TRCN0000287847 GCAGAACTTGAAGCTAATTTA pLKO_005 194 CDS 100% 15.000 7.500 Y Ube2f n/a
8 TRCN0000416997 TGATCCAAACAAGCTTCATTG pLKO_005 241 CDS 100% 10.800 5.400 Y UBE2F n/a
9 TRCN0000034110 CCCACAAGAACATTAAAGGAT pLKO.1 464 CDS 100% 3.000 1.500 Y UBE2F n/a
10 TRCN0000034112 CAGAACATCATTTGCGGGACA pLKO.1 555 CDS 100% 2.160 1.080 Y UBE2F n/a
11 TRCN0000098574 GAACATTCAATTGATGGCACT pLKO.1 434 CDS 100% 2.160 1.080 Y Ube2f n/a
12 TRCN0000287773 GAACATTCAATTGATGGCACT pLKO_005 434 CDS 100% 2.160 1.080 Y Ube2f n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001278306.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.