Transcript: Human NM_001283031.1

Homo sapiens sec1 family domain containing 1 (SCFD1), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-07-06
Taxon:
Homo sapiens (human)
Gene:
SCFD1 (23256)
Length:
2145
CDS:
553..1926

Additional Resources:

NCBI RefSeq record:
NM_001283031.1
NBCI Gene record:
SCFD1 (23256)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001283031.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000183077 CTACTTGGAATGTGGATAAAT pLKO.1 1952 3UTR 100% 15.000 21.000 N SCFD1 n/a
2 TRCN0000418810 ATCTACCTGTTACTCGTATTT pLKO_005 1628 CDS 100% 13.200 18.480 N SCFD1 n/a
3 TRCN0000420263 GATGAGGTCAAACGACTTAAA pLKO_005 1054 CDS 100% 13.200 10.560 N SCFD1 n/a
4 TRCN0000183461 GCAACCTTAATCCTTTACAAT pLKO.1 1451 CDS 100% 5.625 4.500 N SCFD1 n/a
5 TRCN0000093306 CCAGTATGGAAGGTACTCATT pLKO.1 206 5UTR 100% 4.950 3.960 N Scfd1 n/a
6 TRCN0000324373 CCAGTATGGAAGGTACTCATT pLKO_005 206 5UTR 100% 4.950 3.960 N Scfd1 n/a
7 TRCN0000415207 AGCTTCCAGAGGCCCTTATTA pLKO_005 751 CDS 100% 15.000 10.500 N SCFD1 n/a
8 TRCN0000428780 CAGTATGGAAGGTACTCATTT pLKO_005 207 5UTR 100% 13.200 9.240 N SCFD1 n/a
9 TRCN0000183720 CAGAAGAACCTTACTATGATA pLKO.1 1929 3UTR 100% 5.625 3.938 N SCFD1 n/a
10 TRCN0000183046 CTTTACATCATACTTGGACAT pLKO.1 806 CDS 100% 4.050 2.835 N SCFD1 n/a
11 TRCN0000148168 GAATCAGTTCAGCAAGAACTA pLKO.1 1012 CDS 100% 0.495 0.347 N SCFD1 n/a
12 TRCN0000093308 GAAACTGTTATGGACACTATT pLKO.1 556 CDS 100% 13.200 9.240 N Scfd1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001283031.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.