Transcript: Mouse NM_001286218.1

Mus musculus fucose mutarotase (Fuom), transcript variant 3, mRNA.

Source:
NCBI, updated 2017-06-03
Taxon:
Mus musculus (mouse)
Gene:
Fuom (69064)
Length:
2269
CDS:
1..441

Additional Resources:

NCBI RefSeq record:
NM_001286218.1
NBCI Gene record:
Fuom (69064)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001286218.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000177827 CGATATGGAAGCGTTATGAAT pLKO.1 257 CDS 100% 5.625 7.875 N Fuom n/a
2 TRCN0000328151 CGATATGGAAGCGTTATGAAT pLKO_005 257 CDS 100% 5.625 7.875 N Fuom n/a
3 TRCN0000181897 GAAGCGTTATGAATCCCTTCT pLKO.1 264 CDS 100% 4.050 5.670 N Fuom n/a
4 TRCN0000182710 CAAGAAGGGAACTCTTGACCT pLKO.1 408 CDS 100% 0.264 0.211 N Fuom n/a
5 TRCN0000328088 TGAAGCTAGAGAGATTTGAAT pLKO_005 314 CDS 100% 5.625 3.938 N Fuom n/a
6 TRCN0000198677 CCTGATGAAGCTAGAGAGATT pLKO.1 309 CDS 100% 4.950 3.465 N Fuom n/a
7 TRCN0000181597 GCGTTATGAATCCCTTCTTCT pLKO.1 267 CDS 100% 4.950 3.465 N Fuom n/a
8 TRCN0000328152 GCGTTATGAATCCCTTCTTCT pLKO_005 267 CDS 100% 4.950 3.465 N Fuom n/a
9 TRCN0000328153 GTCCTTGCTGATGCGAACTTC pLKO_005 135 CDS 100% 4.950 3.465 N Fuom n/a
10 TRCN0000328154 TTGACCTCGGACCCTCATAGA pLKO_005 422 CDS 100% 4.950 3.465 N Fuom n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001286218.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.