Transcript: Human NM_001288588.1

Homo sapiens zinc finger protein 280D (ZNF280D), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-02-24
Taxon:
Homo sapiens (human)
Gene:
ZNF280D (54816)
Length:
4983
CDS:
708..3647

Additional Resources:

NCBI RefSeq record:
NM_001288588.1
NBCI Gene record:
ZNF280D (54816)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001288588.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000153423 GCATTGAGTGTTGTTCCGAAA pLKO.1 2584 CDS 100% 4.050 5.670 N ZNF280D n/a
2 TRCN0000152123 CCTTAGAAATAGGCCCATAAA pLKO.1 4491 3UTR 100% 13.200 10.560 N ZNF280D n/a
3 TRCN0000150344 CCTGAATCTGTTAGTTCTGAT pLKO.1 3414 CDS 100% 4.950 3.960 N ZNF280D n/a
4 TRCN0000154044 CCCATTGTTGAAACTCCTGTA pLKO.1 4436 3UTR 100% 4.050 3.240 N ZNF280D n/a
5 TRCN0000152589 GCTTTCATAGTAACCGTCCAA pLKO.1 2701 CDS 100% 2.640 2.112 N ZNF280D n/a
6 TRCN0000151889 CCAACGCAAGTAAACCTAATA pLKO.1 2416 CDS 100% 13.200 9.240 N ZNF280D n/a
7 TRCN0000152158 CATCGTCAGTTGTGATTCAAA pLKO.1 3176 CDS 100% 5.625 3.938 N ZNF280D n/a
8 TRCN0000153270 GCTTGTCCAAAGTGCAACATT pLKO.1 1428 CDS 100% 5.625 3.938 N ZNF280D n/a
9 TRCN0000155082 GCAACAGTAGACCTGGAAGAT pLKO.1 3609 CDS 100% 4.950 3.465 N ZNF280D n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001288588.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.