Transcript: Human NM_001288592.2

Homo sapiens zinc finger with KRAB and SCAN domains 7 (ZKSCAN7), transcript variant 5, mRNA.

Source:
NCBI, updated 2019-09-28
Taxon:
Homo sapiens (human)
Gene:
ZKSCAN7 (55888)
Length:
1930
CDS:
317..1438

Additional Resources:

NCBI RefSeq record:
NM_001288592.2
NBCI Gene record:
ZKSCAN7 (55888)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001288592.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000107395 CCCGAGTTCTACGTCCCACAT pLKO.1 1733 3UTR 100% 1.350 1.890 N ZKSCAN7 n/a
2 TRCN0000107397 CTCTGGGTACAACAAAGGAAT pLKO.1 339 CDS 100% 4.950 3.465 N ZKSCAN7 n/a
3 TRCN0000107398 GCATATGAGGACCTATCTGTA pLKO.1 560 CDS 100% 0.000 0.000 N ZKSCAN7 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001288592.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.