Transcript: Human NM_001288989.2

Homo sapiens phospholipase C epsilon 1 (PLCE1), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-07-23
Taxon:
Homo sapiens (human)
Gene:
PLCE1 (51196)
Length:
12433
CDS:
693..7553

Additional Resources:

NCBI RefSeq record:
NM_001288989.2
NBCI Gene record:
PLCE1 (51196)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001288989.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000051067 GCGGATTATTGGAACTCACTA pLKO.1 3691 CDS 100% 4.950 3.960 N PLCE1 n/a
2 TRCN0000289427 GCGGATTATTGGAACTCACTA pLKO_005 3691 CDS 100% 4.950 3.960 N PLCE1 n/a
3 TRCN0000051065 GCTGCAATGTTTGAGGCAAAT pLKO.1 6123 CDS 100% 10.800 7.560 N PLCE1 n/a
4 TRCN0000289426 GCTGCAATGTTTGAGGCAAAT pLKO_005 6123 CDS 100% 10.800 7.560 N PLCE1 n/a
5 TRCN0000051063 CCAACCAATTTACTGATGAAT pLKO.1 7738 3UTR 100% 5.625 3.938 N PLCE1 n/a
6 TRCN0000306746 CCAACCAATTTACTGATGAAT pLKO_005 7738 3UTR 100% 5.625 3.938 N PLCE1 n/a
7 TRCN0000051064 CCATCATTTATCATGGACATA pLKO.1 4987 CDS 100% 4.950 3.465 N PLCE1 n/a
8 TRCN0000289424 CCATCATTTATCATGGACATA pLKO_005 4987 CDS 100% 4.950 3.465 N PLCE1 n/a
9 TRCN0000051066 CCACTTTGTTAGTCAGGAGAT pLKO.1 1657 CDS 100% 4.050 2.835 N PLCE1 n/a
10 TRCN0000289359 CCACTTTGTTAGTCAGGAGAT pLKO_005 1657 CDS 100% 4.050 2.835 N PLCE1 n/a
11 TRCN0000157476 GCCAACATGGTGAAACCCAAT pLKO.1 9198 3UTR 100% 4.050 2.025 Y NFASC n/a
12 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 11736 3UTR 100% 5.625 2.813 Y KLHL30 n/a
13 TRCN0000264189 CAAGTAGCTGGGACTACAGGA pLKO_005 11606 3UTR 100% 2.640 1.320 Y LINC01098 n/a
14 TRCN0000130146 CAGGTTCAAGTGATTCTCCTA pLKO.1 11574 3UTR 100% 2.640 1.320 Y DICER1-AS1 n/a
15 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 11736 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001288989.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.