Transcript: Mouse NM_001289455.1

Mus musculus fucosyltransferase 7 (Fut7), transcript variant 6, mRNA.

Source:
NCBI, updated 2017-06-03
Taxon:
Mus musculus (mouse)
Gene:
Fut7 (14347)
Length:
1787
CDS:
286..1314

Additional Resources:

NCBI RefSeq record:
NM_001289455.1
NBCI Gene record:
Fut7 (14347)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001289455.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000093852 AGCATGAATGAGAGTCGTTAT pLKO.1 1150 CDS 100% 10.800 7.560 N Fut7 n/a
2 TRCN0000093853 AGGAGCAACATTCATGGTAAT pLKO.1 345 CDS 100% 10.800 7.560 N Fut7 n/a
3 TRCN0000093850 CGGCGTGATTCAGATATCTTT pLKO.1 715 CDS 100% 5.625 3.938 N Fut7 n/a
4 TRCN0000093851 CAGGTCTATGAAGACCTTGAA pLKO.1 1276 CDS 100% 0.495 0.347 N Fut7 n/a
5 TRCN0000093849 CCAGGATAAGAGACAATGAAT pLKO.1 1495 3UTR 100% 5.625 3.375 N Fut7 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001289455.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.