Transcript: Mouse NM_001289736.1

Mus musculus nuclear RNA export factor 2 (Nxf2), transcript variant 3, mRNA.

Source:
NCBI, updated 2015-07-31
Taxon:
Mus musculus (mouse)
Gene:
Nxf2 (83454)
Length:
2319
CDS:
77..2092

Additional Resources:

NCBI RefSeq record:
NM_001289736.1
NBCI Gene record:
Nxf2 (83454)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001289736.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000102498 GCCTAATAGTACCGACAAGAA pLKO.1 1155 CDS 100% 4.950 6.930 N Nxf2 n/a
2 TRCN0000102497 GCGAGGACATAATAGTACCAA pLKO.1 1110 CDS 100% 3.000 3.900 N Nxf2 n/a
3 TRCN0000102495 CATCCACATTATTTCCCTTTA pLKO.1 2133 3UTR 100% 10.800 7.560 N Nxf2 n/a
4 TRCN0000102496 CCCGAAATAAACTGAAGTCAT pLKO.1 948 CDS 100% 4.950 3.465 N Nxf2 n/a
5 TRCN0000102499 CGACACGTCATTCAAGCCTTT pLKO.1 1900 CDS 100% 4.050 2.835 N Nxf2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001289736.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.