Transcript: Mouse NM_001289748.1

Mus musculus transglutaminase 6 (Tgm6), transcript variant 3, mRNA.

Source:
NCBI, updated 2014-01-28
Taxon:
Mus musculus (mouse)
Gene:
Tgm6 (241636)
Length:
3308
CDS:
738..2189

Additional Resources:

NCBI RefSeq record:
NM_001289748.1
NBCI Gene record:
Tgm6 (241636)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001289748.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000110671 GCCTTGATTCAATTCAACATA pLKO.1 2064 CDS 100% 5.625 4.500 N Tgm6 n/a
2 TRCN0000110674 CAATCTGAGTGTGGACAAATA pLKO.1 986 CDS 100% 13.200 9.240 N Tgm6 n/a
3 TRCN0000110672 GCAATCTGAGTGTGGACAAAT pLKO.1 985 CDS 100% 13.200 9.240 N Tgm6 n/a
4 TRCN0000110673 CAGTTTATTCTCCTGTTCAAT pLKO.1 459 5UTR 100% 5.625 3.938 N Tgm6 n/a
5 TRCN0000110670 GCCATGAAGAATATGCCACTA pLKO.1 2946 3UTR 100% 4.050 2.835 N Tgm6 n/a
6 TRCN0000056297 CGAGGCGTGGAGAAGCACATA pLKO.1 564 5UTR 100% 1.650 1.155 N TGM6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001289748.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.