Transcript: Human NM_001320454.2

Homo sapiens chromosome 1 open reading frame 61 (C1orf61), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-06-01
Taxon:
Homo sapiens (human)
Gene:
C1orf61 (10485)
Length:
795
CDS:
196..525

Additional Resources:

NCBI RefSeq record:
NM_001320454.2
NBCI Gene record:
C1orf61 (10485)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001320454.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000263701 GGGCTGGATTCCCTCTGATAA pLKO_005 480 CDS 100% 13.200 10.560 N C1orf61 n/a
2 TRCN0000282768 TCTAGCAAGTTGAAGTCAAAC pLKO_005 534 3UTR 100% 10.800 7.560 N C1orf61 n/a
3 TRCN0000167021 CTCTAGCAAGTTGAAGTCAAA pLKO.1 533 3UTR 100% 4.950 3.465 N C1orf61 n/a
4 TRCN0000172451 CAGCACAAGCCATTGTGGAAT pLKO.1 339 CDS 100% 0.495 0.297 N C1orf61 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001320454.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.