Transcript: Human NM_001321076.2

Homo sapiens discs large MAGUK scaffold protein 4 (DLG4), transcript variant 5, mRNA.

Source:
NCBI, updated 2019-09-30
Taxon:
Homo sapiens (human)
Gene:
DLG4 (1742)
Length:
5849
CDS:
327..2321

Additional Resources:

NCBI RefSeq record:
NM_001321076.2
NBCI Gene record:
DLG4 (1742)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001321076.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235628 ACGATCATCGCTCAGTATAAA pLKO_005 1305 CDS 100% 15.000 21.000 N DLG4 n/a
2 TRCN0000006111 GCATGAGTGGAAGGTCTAAAT pLKO.1 2910 3UTR 100% 13.200 18.480 N DLG4 n/a
3 TRCN0000235625 TGCATGAGTGGAAGGTCTAAA pLKO_005 2909 3UTR 100% 13.200 18.480 N DLG4 n/a
4 TRCN0000006112 CGTATGATGTTGTCTACCTAA pLKO.1 850 CDS 100% 4.950 6.930 N DLG4 n/a
5 TRCN0000006114 GCTAGAGATTAACAAGCGGAT pLKO.1 2120 CDS 100% 2.160 3.024 N DLG4 n/a
6 TRCN0000235627 ACGAGAGTGGTCAAGGTTAAA pLKO_005 1634 CDS 100% 13.200 9.240 N DLG4 n/a
7 TRCN0000321881 ACGAGAGTGGTCAAGGTTAAA pLKO_005 1634 CDS 100% 13.200 9.240 N Dlg4 n/a
8 TRCN0000235624 TATGATGTTGTCTACCTAAAG pLKO_005 852 CDS 100% 10.800 7.560 N DLG4 n/a
9 TRCN0000006115 GTCACGATCATCGCTCAGTAT pLKO.1 1302 CDS 100% 4.950 3.465 N DLG4 n/a
10 TRCN0000430981 GCCACCATGCCTGGCTAATTT pLKO_005 3672 3UTR 100% 15.000 7.500 Y GTF2IRD2 n/a
11 TRCN0000072628 CCTCCCAAAGTGCTAGGATTA pLKO.1 5726 3UTR 100% 10.800 5.400 Y MRPS16 n/a
12 TRCN0000140657 CCTCCCAAAGTGCTAGGATAA pLKO.1 5726 3UTR 100% 10.800 5.400 Y CD3EAP n/a
13 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 3777 3UTR 100% 5.625 2.813 Y KLHL30 n/a
14 TRCN0000161389 GCAGATTGGAGACAAGATCAT pLKO.1 764 CDS 100% 4.950 2.475 Y TAX1BP3 n/a
15 TRCN0000172742 GAGACAGAGTCTTGCTCTGTT pLKO.1 3541 3UTR 100% 0.495 0.248 Y C11orf44 n/a
16 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 3777 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001321076.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.