Transcript: Human NM_001328674.2

Homo sapiens synaptic vesicle glycoprotein 2A (SV2A), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-07-07
Taxon:
Homo sapiens (human)
Gene:
SV2A (9900)
Length:
4204
CDS:
280..2508

Additional Resources:

NCBI RefSeq record:
NM_001328674.2
NBCI Gene record:
SV2A (9900)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001328674.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000060112 CGGGCAGTACTTCAATGACAA pLKO.1 1803 CDS 100% 4.950 6.930 N SV2A n/a
2 TRCN0000304036 ACCTGTTCGAGTACAAGTTTG pLKO_005 1958 CDS 100% 10.800 8.640 N SV2A n/a
3 TRCN0000060108 GCCGTCTGATAAACAGTACAT pLKO.1 1985 CDS 100% 4.950 3.960 N SV2A n/a
4 TRCN0000310809 ACAGAGTCCAGGACGAATATT pLKO_005 383 CDS 100% 15.000 10.500 N SV2A n/a
5 TRCN0000304035 CCCATTGTCTTCTCCTATTTC pLKO_005 1099 CDS 100% 13.200 9.240 N SV2A n/a
6 TRCN0000060109 CCCTGTTTGAAGAGTGTTATT pLKO.1 1865 CDS 100% 13.200 9.240 N SV2A n/a
7 TRCN0000331352 GAAACCACAGGTATGCAATTA pLKO_005 2880 3UTR 100% 13.200 9.240 N SV2A n/a
8 TRCN0000060111 GTTCTCAGTAACCCACATTAA pLKO.1 1452 CDS 100% 13.200 9.240 N SV2A n/a
9 TRCN0000060110 CGACGGAAAGAACGAGAAGAA pLKO.1 700 CDS 100% 4.950 3.465 N SV2A n/a
10 TRCN0000300607 CGACGGAAAGAACGAGAAGAA pLKO_005 700 CDS 100% 4.950 3.465 N SV2A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001328674.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.