Transcript: Human NM_001330088.1

Homo sapiens neurexin 1 (NRXN1), transcript variant alpha11, mRNA.

Source:
NCBI, updated 2019-09-24
Taxon:
Homo sapiens (human)
Gene:
NRXN1 (9378)
Length:
9260
CDS:
1478..5821

Additional Resources:

NCBI RefSeq record:
NM_001330088.1
NBCI Gene record:
NRXN1 (9378)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001330088.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000204076 GCTACCTATGATCCTGGATTT pLKO.1 6197 3UTR 100% 10.800 15.120 N NRXN1 n/a
2 TRCN0000203815 CATCGCCATTGAAGAATCCAA pLKO.1 4987 CDS 100% 3.000 4.200 N NRXN1 n/a
3 TRCN0000203688 CGCACGCATTCATAAAGCAAA pLKO.1 6115 3UTR 100% 4.950 3.960 N NRXN1 n/a
4 TRCN0000094626 GCTGGCTATAACCTCAATGAT pLKO.1 3794 CDS 100% 5.625 3.938 N Nrxn1 n/a
5 TRCN0000186951 CCATTGAAGAATCCAATGCAA pLKO.1 4992 CDS 100% 0.300 0.210 N NRXN1 n/a
6 TRCN0000186601 GCTGTTGTAAAGGAGAAACAA pLKO.1 5738 CDS 100% 5.625 3.375 N NRXN1 n/a
7 TRCN0000166364 CACACACACACACACACACAA pLKO.1 7021 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001330088.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.