Transcript: Mouse NM_001347330.1

Mus musculus zinc finger protein 758 (Zfp758), transcript variant 2, mRNA.

Source:
NCBI, updated 2016-12-09
Taxon:
Mus musculus (mouse)
Gene:
Zfp758 (224598)
Length:
2890
CDS:
130..1881

Additional Resources:

NCBI RefSeq record:
NM_001347330.1
NBCI Gene record:
Zfp758 (224598)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001347330.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000337728 TACTAACAGAAGTGATCTTAG pLKO_005 1371 CDS 100% 10.800 8.640 N Zfp758 n/a
2 TRCN0000096491 CAGTCAAAGTACACCTTATAA pLKO.1 513 CDS 100% 15.000 10.500 N Zfp758 n/a
3 TRCN0000337729 CATATTGTCCATGAGGATATA pLKO_005 436 CDS 100% 13.200 9.240 N Zfp758 n/a
4 TRCN0000096489 CCCTTCAGATAATGTTCAAAT pLKO.1 2281 3UTR 100% 13.200 9.240 N Zfp758 n/a
5 TRCN0000337730 GTGCTTTATCCAAACAGTATT pLKO_005 2203 3UTR 100% 13.200 9.240 N Zfp758 n/a
6 TRCN0000337663 CATCCAGAAAGGTGATCTTAG pLKO_005 783 CDS 100% 10.800 7.560 N Zfp758 n/a
7 TRCN0000337731 TTATCTAGAAACGATCTTATC pLKO_005 1874 CDS 100% 10.800 7.560 N Zfp758 n/a
8 TRCN0000096492 TGCTTCATCCAGAAAGGTGAT pLKO.1 778 CDS 100% 4.050 2.835 N Zfp758 n/a
9 TRCN0000096493 CACATCGGAAAGAAAGATGAT pLKO.1 673 CDS 100% 4.950 2.970 N Zfp758 n/a
10 TRCN0000239543 ACAGGAGAGAAACCTTATAAA pLKO_005 1327 CDS 100% 15.000 7.500 Y Gm13212 n/a
11 TRCN0000284687 TACAGGAGAGAAACCTTATAA pLKO_005 1326 CDS 100% 15.000 7.500 Y Zfp984 n/a
12 TRCN0000086300 CAGGAGAGAAACCTTACAAAT pLKO.1 992 CDS 100% 13.200 6.600 Y Znf41-ps n/a
13 TRCN0000235353 CAGGAGAGAAACCTTACAAAT pLKO_005 992 CDS 100% 13.200 6.600 Y EG666605 n/a
14 TRCN0000418910 ACCTTACAAATGTAGTGAATG pLKO_005 834 CDS 100% 10.800 5.400 Y Rex2 n/a
15 TRCN0000239545 CCTTACAAATGTAGTGAATTT pLKO_005 835 CDS 100% 13.200 6.600 Y Gm13212 n/a
16 TRCN0000225674 TGTAGTGAGTGTGACAAATTC pLKO_005 1096 CDS 100% 13.200 6.600 Y Zfp995 n/a
17 TRCN0000239789 TGTGACAAATGCTTTACTAAA pLKO_005 1357 CDS 100% 13.200 6.600 Y Zfp985 n/a
18 TRCN0000158848 GAGAAACCTTACAAATGTGAT pLKO.1 1669 CDS 100% 4.950 2.475 Y ZNF28 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001347330.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.