Transcript: Human NM_001350102.2

Homo sapiens ArfGAP with GTPase domain, ankyrin repeat and PH domain 3 (AGAP3), transcript variant 6, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
AGAP3 (116988)
Length:
3185
CDS:
268..2694

Additional Resources:

NCBI RefSeq record:
NM_001350102.2
NBCI Gene record:
AGAP3 (116988)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001350102.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000444159 GATTTAGCCCTCTGCCCTAAG pLKO_005 2889 3UTR 100% 6.000 8.400 N AGAP3 n/a
2 TRCN0000437542 GGTAGTGGCCTTGCGAAAGAA pLKO_005 1119 CDS 100% 5.625 7.875 N AGAP3 n/a
3 TRCN0000425847 CATCGAGGACTCGTTTGTGAA pLKO_005 591 CDS 100% 4.950 6.930 N AGAP3 n/a
4 TRCN0000048000 GCATCCCAATATCTACGCCAT pLKO.1 504 CDS 100% 2.160 3.024 N AGAP3 n/a
5 TRCN0000048001 GCAGAGGAGTCGTTTGAATTT pLKO.1 1765 CDS 100% 13.200 10.560 N AGAP3 n/a
6 TRCN0000047999 GCAGACATCTTGATCCAGCAT pLKO.1 2569 CDS 100% 2.640 2.112 N AGAP3 n/a
7 TRCN0000444944 GTTCAGCCTGGAGGATGAAAT pLKO_005 864 CDS 100% 13.200 9.240 N Agap3 n/a
8 TRCN0000438422 CACACGCCTTCATCCTGAAAC pLKO_005 3010 3UTR 100% 10.800 7.560 N AGAP3 n/a
9 TRCN0000048002 CCGTAGTCCTAGCCTCCTATA pLKO.1 2673 CDS 100% 10.800 7.560 N AGAP3 n/a
10 TRCN0000440510 TGAAGCGGTGCACCTACTATG pLKO_005 1040 CDS 100% 10.800 7.560 N AGAP3 n/a
11 TRCN0000438806 ACATCAACCAGGCCACGAATG pLKO_005 1226 CDS 100% 6.000 4.200 N AGAP3 n/a
12 TRCN0000429939 GAGCTTAAAGTGGGCATAGTG pLKO_005 646 CDS 100% 4.950 3.465 N AGAP3 n/a
13 TRCN0000438364 GGATACGGGCCAAGTATGAAC pLKO_005 2249 CDS 100% 4.950 3.465 N AGAP3 n/a
14 TRCN0000421896 TCAGTTTCCAGACGGTGTACA pLKO_005 884 CDS 100% 4.950 3.465 N AGAP3 n/a
15 TRCN0000442748 TGCCATGGCCAACGTTGTCTT pLKO_005 2448 CDS 100% 4.950 3.465 N AGAP3 n/a
16 TRCN0000425911 TGCTGCGGACAACGGTGAAAG pLKO_005 1631 CDS 100% 3.600 2.520 N AGAP3 n/a
17 TRCN0000047998 CCTGCATGATTACATGCAGAA pLKO.1 1587 CDS 100% 0.405 0.284 N AGAP3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001350102.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.