Transcript: Human NM_001353594.2

Homo sapiens ATP binding cassette subfamily D member 4 (ABCD4), transcript variant 9, mRNA.

Source:
NCBI, updated 2019-09-28
Taxon:
Homo sapiens (human)
Gene:
ABCD4 (5826)
Length:
3036
CDS:
165..1631

Additional Resources:

NCBI RefSeq record:
NM_001353594.2
NBCI Gene record:
ABCD4 (5826)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001353594.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000298675 CTTCGGGAGCAGGTGATATAT pLKO_005 1260 CDS 100% 15.000 12.000 N Abcd4 n/a
2 TRCN0000298676 CTTCGGGAGCAGGTGATATAT pLKO_005 1260 CDS 100% 15.000 12.000 N ABCD4 n/a
3 TRCN0000293961 CTGATTACCTACAAATGATTT pLKO_005 2101 3UTR 100% 13.200 9.240 N ABCD4 n/a
4 TRCN0000298649 GTGAGCATCTTCGGGTATTTC pLKO_005 465 CDS 100% 13.200 9.240 N ABCD4 n/a
5 TRCN0000059878 CCCTACCTTAACCCAAATGAA pLKO.1 2522 3UTR 100% 5.625 3.938 N ABCD4 n/a
6 TRCN0000059879 CGGCATCAACACCTTTGACTA pLKO.1 668 CDS 100% 4.950 3.465 N ABCD4 n/a
7 TRCN0000286571 CGGCATCAACACCTTTGACTA pLKO_005 668 CDS 100% 4.950 3.465 N ABCD4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001353594.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.