Transcript: Human NM_001355227.2

Homo sapiens coiled-coil domain containing 30 (CCDC30), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-06-02
Taxon:
Homo sapiens (human)
Gene:
CCDC30 (728621)
Length:
3762
CDS:
1781..3094

Additional Resources:

NCBI RefSeq record:
NM_001355227.2
NBCI Gene record:
CCDC30 (728621)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001355227.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000129717 CCATGTTAGAGCCTGAATTAT pLKO.1 1163 5UTR 100% 15.000 10.500 N CCDC30 n/a
2 TRCN0000129971 GAAGGAGAAGGAACAATGTAA pLKO.1 840 5UTR 100% 5.625 3.938 N CCDC30 n/a
3 TRCN0000128544 CTACAGAAAGCAAAGGAACAA pLKO.1 949 5UTR 100% 4.950 3.465 N CCDC30 n/a
4 TRCN0000130553 GAGATTCAAAGGCTCACTGAT pLKO.1 808 5UTR 100% 4.950 3.465 N CCDC30 n/a
5 TRCN0000127697 GCTTCCATGTTAGAGCCTGAA pLKO.1 1159 5UTR 100% 4.050 2.835 N CCDC30 n/a
6 TRCN0000128465 GATGAGGAAATTCTGGCTTTA pLKO.1 982 5UTR 100% 10.800 6.480 N CCDC30 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001355227.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.