Transcript: Human NM_001362884.2

Homo sapiens leucine zipper tumor suppressor 1 (LZTS1), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-28
Taxon:
Homo sapiens (human)
Gene:
LZTS1 (11178)
Length:
6010
CDS:
663..2453

Additional Resources:

NCBI RefSeq record:
NM_001362884.2
NBCI Gene record:
LZTS1 (11178)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001362884.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000412798 CAAGAAGCTCAACCGGTATTC pLKO_005 755 CDS 100% 10.800 8.640 N LZTS1 n/a
2 TRCN0000015648 CCCTAAACTTTGGCCTTTGTT pLKO.1 2726 3UTR 100% 5.625 4.500 N LZTS1 n/a
3 TRCN0000436635 CCATCAGAACCTGAGCTATTT pLKO_005 2907 3UTR 100% 13.200 9.240 N LZTS1 n/a
4 TRCN0000424124 ACATTGGAATGCCTTGGAAAT pLKO_005 2846 3UTR 100% 10.800 7.560 N LZTS1 n/a
5 TRCN0000428325 AGGTGATTCAGTACCAGAAAC pLKO_005 2275 CDS 100% 10.800 7.560 N LZTS1 n/a
6 TRCN0000015649 CCTTCTCCAATCAGCTAGAAA pLKO.1 985 CDS 100% 5.625 3.938 N LZTS1 n/a
7 TRCN0000015651 CCACTCGAACAAGGCAGACAA pLKO.1 1382 CDS 100% 4.950 3.465 N LZTS1 n/a
8 TRCN0000042462 CGAAGACTTCTTCTACATCAA pLKO.1 848 CDS 100% 4.950 3.465 N Lzts1 n/a
9 TRCN0000015650 CAGCAACATGATGAGCCTGAA pLKO.1 1325 CDS 100% 4.050 2.835 N LZTS1 n/a
10 TRCN0000015652 CTACATCAAGGTCAGCCAGAA pLKO.1 860 CDS 100% 4.050 2.835 N LZTS1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001362884.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.