Transcript: Human NM_001365293.2

Homo sapiens VPS35 endosomal protein sorting factor like (VPS35L), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
VPS35L (57020)
Length:
3528
CDS:
28..2841

Additional Resources:

NCBI RefSeq record:
NM_001365293.2
NBCI Gene record:
VPS35L (57020)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001365293.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000137133 CATAGACAAAGTGGACTCCAA pLKO.1 2466 CDS 100% 2.640 3.696 N VPS35L n/a
2 TRCN0000134172 CCAGGTTATTCTGACAATGAA pLKO.1 2989 3UTR 100% 5.625 3.938 N VPS35L n/a
3 TRCN0000136923 CCTGTTCTTGTGCAGTTGATT pLKO.1 2032 CDS 100% 5.625 3.938 N VPS35L n/a
4 TRCN0000136719 CGAGATGATGGAAAGGTGTAA pLKO.1 1263 CDS 100% 4.950 3.465 N VPS35L n/a
5 TRCN0000349584 CGAGATGATGGAAAGGTGTAA pLKO_005 1263 CDS 100% 4.950 3.465 N VPS35L n/a
6 TRCN0000133703 GCCTTTATCAAGCATCAACAA pLKO.1 1801 CDS 100% 4.950 3.465 N VPS35L n/a
7 TRCN0000318953 GCCTTTATCAAGCATCAACAA pLKO_005 1801 CDS 100% 4.950 3.465 N VPS35L n/a
8 TRCN0000134760 GATAGAGATGATAACTCCGTT pLKO.1 334 CDS 100% 2.640 1.848 N VPS35L n/a
9 TRCN0000138002 GCCTGTTCTTGTGCAGTTGAT pLKO.1 2031 CDS 100% 4.950 2.970 N VPS35L n/a
10 TRCN0000318947 GCCTGTTCTTGTGCAGTTGAT pLKO_005 2031 CDS 100% 4.950 2.970 N VPS35L n/a
11 TRCN0000138823 GACCAGAAAGTGAAGGCTCTA pLKO.1 631 CDS 100% 4.050 2.430 N VPS35L n/a
12 TRCN0000318889 GACCAGAAAGTGAAGGCTCTA pLKO_005 631 CDS 100% 4.050 2.430 N VPS35L n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001365293.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.