Transcript: Human NM_001365487.2

Homo sapiens acyl-CoA oxidase like (ACOXL), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-06-02
Taxon:
Homo sapiens (human)
Gene:
ACOXL (55289)
Length:
2249
CDS:
225..1064

Additional Resources:

NCBI RefSeq record:
NM_001365487.2
NBCI Gene record:
ACOXL (55289)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001365487.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000428978 AGGAGTGAAGTGCGGAATAAT pLKO_005 374 CDS 100% 15.000 21.000 N ACOXL n/a
2 TRCN0000435087 AGAACCTGCTGGATAAGTTTG pLKO_005 829 CDS 100% 10.800 7.560 N ACOXL n/a
3 TRCN0000046151 CCATTCGCCTATTAGGAACAA pLKO.1 875 CDS 100% 4.950 3.465 N ACOXL n/a
4 TRCN0000072628 CCTCCCAAAGTGCTAGGATTA pLKO.1 1946 3UTR 100% 10.800 5.400 Y MRPS16 n/a
5 TRCN0000140657 CCTCCCAAAGTGCTAGGATAA pLKO.1 1946 3UTR 100% 10.800 5.400 Y CD3EAP n/a
6 TRCN0000172742 GAGACAGAGTCTTGCTCTGTT pLKO.1 1705 3UTR 100% 0.495 0.248 Y C11orf44 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001365487.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.