Transcript: Human NM_001365936.2

Homo sapiens neuroligin 1 (NLGN1), transcript variant 15, mRNA.

Source:
NCBI, updated 2019-08-09
Taxon:
Homo sapiens (human)
Gene:
NLGN1 (22871)
Length:
16578
CDS:
1065..3509

Additional Resources:

NCBI RefSeq record:
NM_001365936.2
NBCI Gene record:
NLGN1 (22871)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001365936.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000222040 CCTGCTGACTTTATCCCATTA pLKO.1 1868 CDS 100% 10.800 7.560 N NLGN1 n/a
2 TRCN0000222043 CCTTACACACATTCAATACAT pLKO.1 3415 CDS 100% 5.625 3.938 N NLGN1 n/a
3 TRCN0000222039 GCGGATCTTCACTCAAACTTT pLKO.1 2454 CDS 100% 5.625 3.938 N NLGN1 n/a
4 TRCN0000222042 CCCAAACCAGTGATGGTGTAT pLKO.1 1578 CDS 100% 4.950 3.465 N NLGN1 n/a
5 TRCN0000222041 GCCATCAACTGACATCACTTT pLKO.1 2924 CDS 100% 4.950 2.970 N NLGN1 n/a
6 TRCN0000032019 CCCAACACTATACCAGGGATT pLKO.1 3390 CDS 100% 4.050 2.430 N Nlgn1 n/a
7 TRCN0000032023 CCTTACAAAGAACTTGTTGAT pLKO.1 2049 CDS 100% 4.950 3.465 N Nlgn1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001365936.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.