Transcript: Human NM_001366028.2

Homo sapiens dynein axonemal heavy chain 12 (DNAH12), transcript variant 4, mRNA.

Source:
NCBI, updated 2019-08-09
Taxon:
Homo sapiens (human)
Gene:
DNAH12 (201625)
Length:
12145
CDS:
182..12064

Additional Resources:

NCBI RefSeq record:
NM_001366028.2
NBCI Gene record:
DNAH12 (201625)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001366028.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000145076 CCAGTTAAATCGCTTGAAGAT pLKO.1 674 CDS 100% 4.950 6.930 N DNAH12 n/a
2 TRCN0000161763 CCAGTTTCTGATCCTGAGTTT pLKO.1 10658 CDS 100% 4.950 6.930 N DNAH12 n/a
3 TRCN0000164007 CCGGTAGCTTACTTGTTGGAA pLKO.1 11460 CDS 100% 3.000 4.200 N DNAH12 n/a
4 TRCN0000160511 CCAATGGATAAGAACCTAAAT pLKO.1 10094 CDS 100% 13.200 10.560 N DNAH12 n/a
5 TRCN0000140020 GCAGCAGTACATCGGAACTTA pLKO.1 1373 CDS 100% 5.625 4.500 N DNAH12 n/a
6 TRCN0000162524 CCCTAGTGATTTCGACATTGA pLKO.1 11269 CDS 100% 4.950 3.960 N DNAH12 n/a
7 TRCN0000160054 CGAGAAATCTATGACAGTAAA pLKO.1 10046 CDS 100% 13.200 9.240 N DNAH12 n/a
8 TRCN0000159606 GCTATCAGATTCAGACTATAT pLKO.1 9022 CDS 100% 13.200 9.240 N DNAH12 n/a
9 TRCN0000142594 GATCAACAAAGGCTGCCAATA pLKO.1 1136 CDS 100% 10.800 7.560 N DNAH12 n/a
10 TRCN0000160429 CCTGAGATATTTGGATTACAT pLKO.1 11099 CDS 100% 5.625 3.938 N DNAH12 n/a
11 TRCN0000145401 GAACTTAGAAGGTGCAAGAAA pLKO.1 1387 CDS 100% 5.625 3.938 N DNAH12 n/a
12 TRCN0000144011 CTCAAACTATGACCAGTGAAA pLKO.1 426 CDS 100% 4.950 3.465 N DNAH12 n/a
13 TRCN0000159763 GCGAGAAATCTATGACAGTAA pLKO.1 10045 CDS 100% 4.950 3.465 N DNAH12 n/a
14 TRCN0000145459 GTCTCATAAATGAGGTGTCAA pLKO.1 597 CDS 100% 4.950 3.465 N DNAH12 n/a
15 TRCN0000139560 CCACCACCTGATTATCCTCAA pLKO.1 410 CDS 100% 4.050 2.835 N DNAH12 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001366028.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.