Transcript: Mouse NM_001372437.1

Mus musculus interferon activated gene 206 (Ifi206), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-30
Taxon:
Mus musculus (mouse)
Gene:
Ifi206 (102639543)
Length:
3376
CDS:
405..3170

Additional Resources:

NCBI RefSeq record:
NM_001372437.1
NBCI Gene record:
Ifi206 (102639543)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001372437.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000238542 CCCAATGTTCATGCAATTATT pLKO_005 3102 CDS 100% 15.000 10.500 N n/a
2 TRCN0000238538 ACGACAGCAATGTGATGAATA pLKO_005 2755 CDS 100% 13.200 9.240 N n/a
3 TRCN0000238541 AGTGGTGGTCTACGGACAATT pLKO_005 2939 CDS 100% 13.200 9.240 N n/a
4 TRCN0000238540 CCTCATGTGACTCTAGCAATA pLKO_005 1536 CDS 100% 10.800 7.560 N n/a
5 TRCN0000238539 TGAGAAGCTGCAAGTGCAGAA pLKO_005 3182 3UTR 100% 4.050 2.835 N n/a
6 TRCN0000166364 CACACACACACACACACACAA pLKO.1 189 5UTR 100% 4.950 2.475 Y KAAG1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001372437.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.