Transcript: Human NM_001374353.1

Homo sapiens GLI family zinc finger 2 (GLI2), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-09-25
Taxon:
Homo sapiens (human)
Gene:
GLI2 (2736)
Length:
7136
CDS:
449..5158

Additional Resources:

NCBI RefSeq record:
NM_001374353.1
NBCI Gene record:
GLI2 (2736)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001374353.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000238363 GTACCATTACGAGCCTCATTC pLKO_005 664 CDS 100% 0.000 0.000 N GLI2 n/a
2 TRCN0000238362 TGAGTCGTCCAGCCAAATTTA pLKO_005 6857 3UTR 100% 15.000 10.500 N GLI2 n/a
3 TRCN0000238360 AGGCTGAGGTGGTCATCTATG pLKO_005 1683 CDS 100% 10.800 7.560 N GLI2 n/a
4 TRCN0000238364 CCTGGCATGACTACCACTATG pLKO_005 4100 CDS 100% 10.800 7.560 N GLI2 n/a
5 TRCN0000238361 CTGGACAGGGATGACTGTAAG pLKO_005 1658 CDS 100% 10.800 7.560 N GLI2 n/a
6 TRCN0000033333 CCAACGAGAAACCCTACATCT pLKO.1 2073 CDS 100% 4.950 3.465 N GLI2 n/a
7 TRCN0000033329 CCGCTTCAGATGACAGATGTT pLKO.1 5284 3UTR 100% 4.950 3.465 N GLI2 n/a
8 TRCN0000033330 CACTCAAGGATTCCTGCTCAT pLKO.1 2613 CDS 100% 4.050 2.835 N GLI2 n/a
9 TRCN0000033332 GCTCTACTACTACGGCCAGAT pLKO.1 4729 CDS 100% 4.050 2.835 N GLI2 n/a
10 TRCN0000033331 GTTCCTGAACATGATGACCTA pLKO.1 5137 CDS 100% 2.640 1.848 N GLI2 n/a
11 TRCN0000166364 CACACACACACACACACACAA pLKO.1 6492 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001374353.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.