Transcript: Human NM_002398.3

Homo sapiens Meis homeobox 1 (MEIS1), mRNA.

Source:
NCBI, updated 2019-09-10
Taxon:
Homo sapiens (human)
Gene:
MEIS1 (4211)
Length:
4566
CDS:
733..1905

Additional Resources:

NCBI RefSeq record:
NM_002398.3
NBCI Gene record:
MEIS1 (4211)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_002398.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000360401 CAATTTCTGCCACCGGTATAT pLKO_005 1233 CDS 100% 13.200 18.480 N Meis1 n/a
2 TRCN0000015970 CCTCTGTCAATGACGCTTTAA pLKO.1 926 CDS 100% 13.200 18.480 N MEIS1 n/a
3 TRCN0000012525 CCAAACAGATTCGCGCAGAAA pLKO.1 1106 CDS 100% 4.950 6.930 N Meis1 n/a
4 TRCN0000012527 GTACACGAATTATGTGACAAT pLKO.1 1216 CDS 100% 4.950 6.930 N Meis1 n/a
5 TRCN0000360330 CAGAAGCCTCCTTACATTAAA pLKO_005 2557 3UTR 100% 15.000 10.500 N Meis1 n/a
6 TRCN0000321056 TAGAGAAGGTACACGAATTAT pLKO_005 1208 CDS 100% 15.000 10.500 N Meis1 n/a
7 TRCN0000434388 ATGTAACCTTCATCTAGTTAA pLKO_005 1900 CDS 100% 13.200 9.240 N MEIS1 n/a
8 TRCN0000012526 CCATCCTTCAAGTGAACAATT pLKO.1 1676 CDS 100% 13.200 9.240 N Meis1 n/a
9 TRCN0000434701 GATTCAAGCCATACAAGTATT pLKO_005 1167 CDS 100% 13.200 9.240 N MEIS1 n/a
10 TRCN0000320982 TTATCCATATTACGTTGTTTC pLKO_005 2463 3UTR 100% 10.800 7.560 N Meis1 n/a
11 TRCN0000015971 CGGTATATTAGCTGTTTGAAA pLKO.1 1246 CDS 100% 5.625 3.938 N MEIS1 n/a
12 TRCN0000015972 CCCTCTTGGAACAGAGATCAT pLKO.1 1363 CDS 100% 4.950 3.465 N MEIS1 n/a
13 TRCN0000015969 CCAGCATCTAACACACCCTTA pLKO.1 1608 CDS 100% 4.050 2.835 N MEIS1 n/a
14 TRCN0000012523 CCATATTTGAATTGGCCTGAA pLKO.1 2780 3UTR 100% 4.050 2.835 N Meis1 n/a
15 TRCN0000015968 GCCGTGTGTTTAGAAGCCTAA pLKO.1 2912 3UTR 100% 4.050 2.835 N MEIS1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_002398.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.