Transcript: Human NM_002403.4

Homo sapiens microfibril associated protein 2 (MFAP2), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-09-27
Taxon:
Homo sapiens (human)
Gene:
MFAP2 (4237)
Length:
1045
CDS:
76..627

Additional Resources:

NCBI RefSeq record:
NM_002403.4
NBCI Gene record:
MFAP2 (4237)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_002403.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000372912 CGTCCAGTACACCCACTATAG pLKO_005 171 CDS 100% 10.800 15.120 N MFAP2 n/a
2 TRCN0000372911 TCGTACAGTGTGTGCCCATGA pLKO_005 489 CDS 100% 4.050 5.670 N MFAP2 n/a
3 TRCN0000152468 CCGTGTGTACGTCATTAACAA pLKO.1 456 CDS 100% 5.625 3.938 N MFAP2 n/a
4 TRCN0000153377 GACAACCCAGACTACTATGAT pLKO.1 202 CDS 100% 5.625 3.938 N MFAP2 n/a
5 TRCN0000155247 GCAAGTCCAACAGGAAGTCAT pLKO.1 279 CDS 100% 4.950 3.465 N MFAP2 n/a
6 TRCN0000189947 GCCTTGCAAACAGTGTCTCAA pLKO.1 411 CDS 100% 4.950 3.465 N Mfap2 n/a
7 TRCN0000372910 CTCCGAGGAACAGTTCCAGTT pLKO_005 246 CDS 100% 4.050 2.835 N MFAP2 n/a
8 TRCN0000150805 GTACGTCATTAACAAGGAGAT pLKO.1 462 CDS 100% 4.050 2.835 N MFAP2 n/a
9 TRCN0000154629 CAAACAGTGTCTCAACGAGGT pLKO.1 417 CDS 100% 2.160 1.512 N MFAP2 n/a
10 TRCN0000154362 CAAGTTCTCCAAATGTGGCGT pLKO.1 540 CDS 100% 0.660 0.462 N MFAP2 n/a
11 TRCN0000154999 GATCGACAACCCAGACTACTA pLKO.1 198 CDS 100% 4.950 2.970 N MFAP2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_002403.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.